Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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GSE102048

GEO first seen 2018

Profiling proliferative cells and their progeny in damaged murine hearts

Organism
Mus musculus
Samples
63
Type
Expression profiling by high...
Submitted
2017-07-31

The significance of cardiac stem cell (CSC) populations for cardiac regeneration remains disputed. Here, we apply the most direct definition of stem cell function (the ability to replace lost tissue through cell division) to interrogate the existence of CSCs. By single-cell mRNA sequencing and genetic lineage tracing using two Ki67 knockin mouse models, we map all proliferating cells and their progeny in homoeostatic and regenerating murine hearts. Cycling cardiomyocytes were only robustly obser...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Kai KretzschmarYorick PostMarie Bannier-HélaouëtJarno DrostOnur BasakVivan S LiMaaike van den BornDanielle VersteegLieneke KooijmanStefan van der ElstJohan H van EsEva van RooijHans Clevers

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
63 / 63 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 223785703200 reported
total reads 1538361777 reported
supplementary file types CSV reported
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently