Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE102152

GEO first seen 2017

Identification of anti-salt genes in rice culture

Organism
Oryza sativa
Samples
9
Type
Expression profiling by high...
Submitted
2017-08-02

Salt-water Rice has stronger resistance than common rice under high salt environment. We aim to find anti-salt genes by comparing the gene expression, which can provide target genes for further function research

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Risheng Cheng
Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Oryza sativa (rice) bulk RNA-seq with measured quality metrics (97.5% Q20, 93.5% Q30, 49.6 bp mean read length, zero adapter content) despite metadata unavailability. The high base quality and minimal contamination support plant transcriptome profiling and transcript reconstruction. Limited by inaccessible experimental metadata; sufficient quality metrics enable de novo and reference-guided transcript assembly.

Data type / assay
bulk-RNA-seq
Organism
Oryza sativa
Metrics (value · how obtained)
n content pct 0.006 measured
pct q20 bases 97.5 measured
pct q30 bases 93.5 measured
gc content pct 47.2 measured
mean read length 49.6 measured
mean base quality 36.6 measured
adapter content pct 0 measured
duplication rate pct 13.67 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.5 measured ×1 100%
mean base quality 36.6 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 13.67 measured ×0.4 100%
QC cost 1.2 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0