Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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GSE102155

GEO first seen 2018

Mitotically associated long non-coding RNA, MANCR regulates cell cycle in triple negative breast cancer cells

Organism
Homo sapiens
Samples
6
Type
Expression profiling by high...
Submitted
2017-08-02

Triple negative breast cancer (TNBC) is an aggressive breast cancer subtype that is difficult to treat as it is unresponsive to hormone-therapy; therefore, it is imperative to identify novel, targetable regulators of progression in TNBC. Long non-coding RNAs (lncRNAs) are important regulators in breast cancer and have great potential as therapeutic targets; however, little is known about how the majority of lncRNAs function within TNBC cells. In this study, we identify a novel lncRNA, MANCR (LIN...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Kirsten TracyCoralee TyeJoseph BoydJane LianGary Stein
Reused by

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk RNA-seq with solid quality across measured metrics. Q30 base fraction (87.3%) is the primary limitation, slightly below A-grade ceiling; modest adapter content (2.46%) is also elevated but manageable. This dataset is reusable for most transcriptome analyses, though consider trimming adapters before use.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.002 measured
pct q20 bases 95.2 measured
pct q30 bases 87.3 measured
gc content pct 53.3 measured
mean read length 101 measured
mean base quality 34.7 measured
adapter content pct 2.46 measured
duplication rate pct 29.8 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.3 measured ×1 87%
mean base quality 34.7 measured ×0.6 100%
adapter content pct 2.46 measured ×0.4 97%
duplication rate pct 29.8 measured ×0.4 100%
QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0