RNA-Sequencing of EC and PVC from aged APOE mice
RNA-Sequencing of entorhinal cortex and primary visual cortex from 14-15 month old APOE3/4 vs. APOE3/3 targeted replacement mice.
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
- The Endosomal–Lysosomal Pathway Is Dysregulated by APOE4 Express... 2017 · 140 cites
Deep data QC
94/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Large-scale mouse (Mus musculus) bulk RNA-seq on HiSeq 2000 comprising 1.97 billion reads across 66 FASTQ files, with 95.3% Q20 and 87% Q30 base quality. Sequencing depth is sufficient for detailed gene expression studies, tissue-specific isoform detection, and comparative transcriptomics. Slightly lower Q30 (87%) suggests value in screening for 3′ polyadenylation bias or adapter artifacts.
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0