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Next Generation Sequencing Facilitates Quantitative Analysis of ZEB1-Regulated Transcriptomes
The goal of this study is to analyze the transcripts regulated by ZEB1.
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Jonathan M Kurie
Reused by
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
AB 5500xl Genetic Analyzer
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6 / 6 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
33057684525
reported
total reads
440769127
reported
supplementary file types
TXT
reported
QC cost
4 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently