Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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GSE102407

GEO first seen 2022

Role of BET proteins in YAP/TAZ-dependent transcription [RNA-seq 1]

Organism
Homo sapiens
Samples
14
Type
Expression profiling by high...
Submitted
2017-08-09

We performed RNA-seq experiments to identify YAP/TAZ target genes in triple negative breast cancer cells, and evaluate the relevance of BET proteins for their expression.

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Mattia ForcatoSilvio BicciatoGiusy BattilanaFrancesca ZanconatoMichelangelo CordenonsiStefano Piccolo
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
14 / 14 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 25766964700 reported
total reads 515339294 reported
n content pct 0.17 measured
pct q20 bases 98.6 measured
pct q30 bases 97.3 measured
gc content pct 49.4 measured
mean read length 50 measured
mean base quality 36 measured
adapter content pct 0 measured
duplication rate pct 32.13 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.3 measured ×1 100%
mean base quality 36 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 32.13 measured ×0.4 95%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0