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Next generation sequencing facilitates quantitative transcriptomic comparison between HA107 conditioned and unconditioned germ-free small intestinal tissue.
The goal of this study is to identify durable transcriptomic reprogramming after transient bacterial colonisation in germ-free mice.
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Yasuhiro UchimuraAndrew J Macpherson
Reused by
- Antibodies Set Boundaries Limiting Microbial Metabolite Penetrat... 2018 · 154 cites
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6 / 6 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
114039896363
reported
total reads
381127595
reported
supplementary file types
XLS
reported
QC cost
5 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently