Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE102659

GEO first seen 2018

N6-Methyladenosine Guides mRNA Alternative Translation during Integrated Stress Response

Organism
Mus musculus
Samples
29
Type
Other; Expression profiling...
Submitted
2017-08-14

The integrated stress response (ISR) facilitates cellular adaptation to a variety of stress conditions via phosphorylation of the common target eIF2α. During ISR, the translation of certain stress-related mRNAs is upregulated in spite of global suppression of protein synthesis.The selective translation often relieson alternative mechanisms, such as leaky scanning or reinitiation, but the underlying mechanism remains incompletely understood. Here we report that,in response to amino acid starvatio...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Ji WanYuanhui MaoJun ZhouShu-Bing Qian
Reused by

Deep data QC

32/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.941 measured
pct q20 bases 68.5 measured
pct q30 bases 44.6 measured
gc content pct 33.5 measured
mean read length 49 measured
mean base quality 26.8 measured
adapter content pct 0 measured
duplication rate pct 33.95 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 32/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 44.6 measured ×1 0%
mean base quality 26.8 measured ×0.6 0%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 33.95 measured ×0.4 91%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0