Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE102740

GEO first seen 2018

Mitotic chromosomes fold by condensin-dependent helical winding of chromatin loop arrays

Organism
Gallus gallus; Homo sapiens
Samples
60
Type
Other
Submitted
2017-08-16

Mitotic chromosome morphogenesis occurs through condensin-mediated disassembly of the interphase conformation and formation of extended prophase loop arrays that then shorten by condensin-dependent helical winding

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Johan H GibcusAnton GoloborodkoKumiko SamejimaItaru SamejimaNatalia NaumovaMasato T KanemakiLinfeng XieJames R PaulsonWilliam C EarnshawLeonid MirnyJob Dekker
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
chromatin-conformation
Organism
Gallus gallus; Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1,290 / 60 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 1563964200700 reported
total reads 14686986053 reported
supplementary file types COOL, TXT reported
QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently