Transcriptomic profile of the retinal ganglion cell type J-RGC
The goal of this experiment was to identify markers and potential regulators of J-RGC development.
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deep data QC
90/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Bulk RNA-seq (mouse). Grade A: lower-than-peak base quality metrics (Q30=85.9%, mean Q=33.6) are the limiting factors, though still within acceptable ranges. Duplication (27.2%) is healthy, and modest N-content (0.028%) is acceptable. The 74.3 bp reads and moderate quality are suitable for standard differential expression but less ideal for sensitive isoform-level work.
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0