Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE102922

GEO first seen 2021

Histone locus regulation by the Drosophila dosage compensation adaptor protein CLAMP

Organism
Drosophila melanogaster
Samples
16
Type
Expression profiling by high...
Submitted
2017-08-22

The conserved histone locus body (HLB) assembles prior to zygotic gene activation early during development and concentrates factors into a nuclear domain of coordinated histone gene regulation. Although HLBs form specifically at replication dependent histone loci, the cis and trans factors that target HLB components to histone genes remained unknown. Here we report that conserved GA-repeat cis elements within the bidirectional histone3-histone4 promoter direct HLB formation in Drosophila. In add...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Leila E RiederKaitlin P KoreskiKara A BoltzGuray KuzuJennifer A UrbanSarah BowmanAnna ZeidmanWilliam T Jordan IIIMichael Y TolstorukovWilliam F MarzluffRobert J DuronioErica N Larschan
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Drosophila melanogaster
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
16 / 16 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 60022593600 reported
total reads 300112968 reported
supplementary file types TXT reported
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently