Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
← Dataset search

GSE102962

GEO first seen 2018

Single-cell RNAseq Reveals Seven Classes of Visceral Sensory Neuron

Organism
Mus musculus
Samples
412
Type
Expression profiling by high...
Submitted
2017-08-22

Integration of nutritional, microbial and inflammatory events along the gut-brain axis can alter bowel physiology and organism behaviour. The principal neural unit in the bowel encoding these stimuli is the visceral sensory neuron with endings at the mucosa, intramurally and along mesenteric blood vessels. Sensory neurons activate reflex pathways and give rise to conscious sensation, however, the diversity and division of function within these neurons is poorly understood. The identification of...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
James R HockleyToni S TaylorGerard CallejoAnna L WilbreyAlex GutteridgeKarsten BachWendy J WinchesterDavid C BulmerGordon McMurrayEwan St. John Smith

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
412 / 412 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 305749197456 reported
total reads 2011507878 reported
supplementary file types TXT reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently