GSE103307

Role of FGFR1 in neuronal devlopment

Organism

Homo sapiens

Samples

15

Type

Expression profiling by high...

Submitted

2017-08-30

Purpose: The goal was to study the effects of nFGFR1 on neuronal progenitor cells, by analyzing different effects of FGFR1 mutants through RNA-seq.

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by

Michal K Stachowiak

Cerebral organoids reveal early cortical maldevelopment in schiz... 2017

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.007 measured

pct q20 bases 97.1 measured

pct q30 bases 94.1 measured

gc content pct 48.4 measured

mean read length 51 measured

mean base quality 35.5 measured

adapter content pct 0.06 measured

duplication rate pct 16.67 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.1 measured ×1 100%

mean base quality 35.5 measured ×0.6 100%

adapter content pct 0.06 measured ×0.4 100%

duplication rate pct 16.67 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0