Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE104193

GEO

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:opus

Bulk human RNA-seq from high-throughput sequencing, profiling expression across the transcriptome. The dataset earns a clean A (100/100): base-call quality is the standout, with 92.8% of bases at Q30 and a mean base quality of 36.4, meaning the great majority of reads are called with high confidence and downstream alignment and quantification will not be limited by sequencing noise — and critically, these are directly measured values (evidence_strength=1), so the grade rests on actual FastQC-style metrics rather than extrapolation. Adapter contamination (0.04%) and N content (0.007%) are negligible, and the 28% duplication rate is unremarkable for RNA-seq, where expression of highly transcribed genes naturally produces duplicate reads, so it should not be mistaken for a library-complexity problem. The one caveat for reuse is that processed expression matrices are not described here — supplementary files are reported only as plain TXT — so confirm the count/normalization format suits your pipeline, but on raw-read quality grounds these data are trustworthy and reusable.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Files available
TXT
Metrics (value · how obtained)
n content pct 0.007 measured
pct q20 bases 97.7 measured
pct q30 bases 92.8 measured
gc content pct 51.1 measured
mean read length 76 measured
mean base quality 36.4 measured
adapter content pct 0.04 measured
duplication rate pct 28 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%
mean base quality 36.4 measured ×0.6 100%
adapter content pct 0.04 measured ×0.4 100%
duplication rate pct 28 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 73