Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE104756

GEO first seen 2020

Differential gene expression tools exhibit substandard performance for long non-coding RNA-sequencing data

Organism
Homo sapiens
Samples
20
Type
Expression profiling by high...
Submitted
2017-10-10

Paired End PolyA-+ RNA-sequencing of NGP cells with and without NGP treatment in 10 replicates.

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Jo VandesompeleCeline Everaert
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
20 / 20 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 60015417214 reported
total reads 397610345 reported
supplementary file types TSV reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently