Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE104784

GEO first seen 2018

RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of human mesenchymal stem cells differentiation from human embryonic stem cells and adult bone marrow mesenchymal stem cells

Organism
Homo sapiens
Samples
7
Type
Expression profiling by high...
Submitted
2017-10-10

Purpose: The goals of this study are to identify the process and the key transcription factors and signaling pathways governing differentiation through comparing the transcriptome profilings in hESC samples collected from day 0 to day 7 after mesenchymal stem cells differentiation with human adult bone marrow MSCs. Methods: mRNA profiles of human adult bone marrow MSCs and hESC samples collected from day 0 to day 7 after mesenchymal stem cells differentiation were generated by deep sequencing us...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Jiaxi ZhouLeisheng Zhang
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
7 / 7 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 7664529138 reported
total reads 156418962 reported
supplementary file types TXT reported
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently