Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE104800

GEO first seen 2017

Replication stress shapes a protective chromatin environment across fragile genomic regions

Organism
Homo sapiens
Samples
36
Type
Genome binding/occupancy pro...
Submitted
2017-10-11

Recent integrative epigenome analyses highlight the importance of functionally distinct chromatin states for gene regulation, cellular differentiation and accurate cell function. How these states are established and maintained is a matter of intense investigation. Here, we present evidence for DNA damage as an unexpected means to shape a protective chromatin environment at genomic regions of recurrent replication stress. Upon aberrant fork stalling within these fragile regions, DNA damage signal...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Jeongkyu KimDavid SturgillRobin SebastianAndy D TranGarrett EdwardsSimran KhuranaAlex KruswickSandra BurkettEri HosoganeUrbain WeyemiWilliam BonnerKarolin LugerPhilipp Oberdoerffer
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
47 / 36 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 212428191836 reported
total reads 3423704287 reported
supplementary file types BED, BW reported
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently