Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE104961

GEO first seen 2017

Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions

Organism
Drosophila melanogaster
Samples
3
Type
Other
Submitted
2017-10-13

The discovery that genomes are partitioned into self-interacting modules or topologically associated domains (TADs) has revolutionized our understanding of the multiscale organization of chromatin. TADs are often considered as stable structures over time, however this view contrasts with the structural dynamics needed for DNA to cope rapidly and accurately with cell-specific and developmental programs regulation. Here, we combine super-resolution microscopy with state-of-the-art DNA labeling met...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Diego I CattoniAndrés M Cardozo GizziMariya GeorgievaMarco Di StefanoAlessandro ValeriDelphine ChamoussetChristophe HoubronStephanie DéjardinJean-Bernard FicheInma GonzálezJia-Ming ChangThomas SextonMarc A Marti-RenomFrédéric BantigniesGiacomo CavalliMarcelo Nollmann

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
chromatin-conformation
Organism
Drosophila melanogaster

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently