← Dataset search
A Pipeline for High Throughput Concentration Response Modeling of Gene Expression for Toxicogenomics
Concentration Response Modeling on targeted RNAseq (TempOSeq) transcripts from the s1500+ panel utilizing iPSC-Cardiomyocytes treated with four chemicals
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
John S.HouseFabian A GrimmDereje D JimaYi-Hui ZhouIvan RusynFred A Wright
Reused by
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
other
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
48 / 48 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
2325499200
reported
total reads
46509984
reported
supplementary file types
CSV, TXT
reported
QC cost
3 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently