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Analysis of putative transcription factor binding regions during natural aging in C. elegans
To exmine the role of comibination of transcription factors in natural aging in C. elegans, we sequenced mRNA of CF512 adult worms at day 1, 5, 9, 13.
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Tae-Young RohSeokjin HamMihwa SeoChang-Pyo HongSeonhye SeoSeongjae V Lee
Reused by
- BiT age: A transcriptome‐based aging clock near the theoretical... 2021 · 172 cites
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Caenorhabditis elegans
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 / 4 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
2566159704
reported
total reads
71282214
reported
supplementary file types
BW
reported
QC cost
14 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently