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BRD4 promotes DNA repair and mediates the formation of TMPRSS2-ERG gene rearrangements in prostate cancer
We employ ChIP- seq methodology to study the effect of ionizing radiation on genome-wide localization of acetylated histone H4
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Susmita G RamanandYunpeng GaoAdam AslamMohammed KanchwalaChao XingRam S Mani
Reused by
- BRD4 Promotes DNA Repair and Mediates the Formation of TMPRSS2-E... 2018 · 145 cites
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ChIP-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct
0.001
measured
pct q20 bases
89.2
measured
pct q30 bases
85.4
measured
gc content pct
40.6
measured
mean read length
76
measured
mean base quality
32.5
measured
adapter content pct
0.18
measured
duplication rate pct
1.17
measured
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
85.4
measured
×1
77%
QC cost
24 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0