Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE106329

GEO first seen 2018

Defining the physiological role of SRP in protein-targeting efficiency and specificity

Organism
Saccharomyces cerevisiae
Samples
30
Type
Other
Submitted
2017-10-30

The signal recognition particle (SRP) enables cotranslational delivery of proteins for translocation into the endoplasmic reticulum (ER), but its full in vivo role remains incompletely explored. We combined rapid auxin-induced SRP degradation with proximity-specific ribosome profiling to define SRP’s in vivo function in yeast. Despite the classic view that SRP recognizes amino-terminal signal sequences, we show that SRP was generally essential for targeting transmembrane domains regardless of th...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Elizabeth A CostaKelly SubramanianJodi NunnariJonathan S Weissman

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
other
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
62 / 30 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 141171903122 reported
total reads 2797786665 reported
supplementary file types TXT reported
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently