GSE106340

GEO

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Mus musculus; B-grade (83/100). Catastrophic 95.93% duplication severely limits utility for variant detection and will inflate false positives; while base quality is acceptable (91.7% Q30), expression profiling remains possible with duplication-aware normalization but overall reliability is compromised.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.015 measured

pct q20 bases 97.5 measured

pct q30 bases 91.7 measured

gc content pct 51.5 measured

mean read length 98 measured

mean base quality 38 measured

adapter content pct 0 measured

duplication rate pct 95.93 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.7 measured ×1 100%

mean base quality 38 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 95.93 measured ×0.4 0%

QC cost 54 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0