Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE10645

GEO first seen 2014

Focused gene expression microarray of tumors from 596 men with prostate cancer using RNA from archival FFPE tissue

Organism
Homo sapiens
Samples
1,192
Type
Expression profiling by arra...
Submitted
2008-02-26

After therapy for prostate cancer many men develop a rising PSA. Such men may develop a local or metastatic recurrence that warrants further therapy. However many men will have no evidence of disease progression other than the rising PSA and will have a good outcome. A case-control design, incorporating test and validation cohorts, was used to test the association of gene expression results with outcome after PSA recurrence. Since clinical training and validation analysis requires tissue fro...

Provenance — who produced it, who reused it

Linked to 14 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Thomas M KollmeyerTohru NakagawaBruce W MorlanS K AndersonEric J BergstrahlBrian J DavisYan W AsmannJulie M CunninghamGeorge G KleeKarla V BallmanRobert B Jenkins
Reused by

9 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Homo sapiens
Read type
not sequencing
Files available
IDAT, JPG, TXT, XLS, XML, ZIP
Metrics (value · how obtained)
supplementary file types IDAT, JPG, TXT, XLS, XML, ZIP reported
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently