Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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GSE106888

GEO first seen 2019

Comparative Single Cell Transcriptomics Reveals Distinct Cell Fate Transition Statuses during Human Cardiac Reprogramming

Organism
Homo sapiens
Samples
704
Type
Expression profiling by high...
Submitted
2017-11-14

Direct lineage conversion among various somatic cell types revolutionized the field of stem cell and regenerative medicine. In addition, the platform of cellular reprogramming offered a powerful system to gain new knowledge about cell plasticity and cell fate determination and ultimately challenged previous notions of cell identity. Previously, we successfully utilized single cell transcriptomics to reconstruct the molecular routes of how a murine fibroblast adopts cardiomyocyte fate following a...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Ziqing LiuYang ZhouLi Qian
Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq (human). Grade A: perfect measured QC (Q30=96.7%, base quality=38.1, duplication=28.93%, adapter=0.02%, N-content=0.013%), short reads (50 bp) but high quality, minimal technical artifacts. This is a high-confidence dataset with excellent properties across all metrics. Highly recommended for reuse in standard and sensitive RNA-seq applications.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.013 measured
pct q20 bases 98.2 measured
pct q30 bases 96.7 measured
gc content pct 45 measured
mean read length 50 measured
mean base quality 38.1 measured
adapter content pct 0.02 measured
duplication rate pct 28.93 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.7 measured ×1 100%
mean base quality 38.1 measured ×0.6 100%
adapter content pct 0.02 measured ×0.4 100%
duplication rate pct 28.93 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0