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GSE107618

GEO first seen 2019

Dissecting the transcriptome landscape of human neural retina and retinal pigment epithelium by Single-cell RNA sequencing analysis

Organism
Homo sapiens
Samples
64
Type
Expression profiling by high...
Submitted
2017-12-02

The developmental pathway of the neural retina (NR) and retinal pigment epithelium (RPE) has been revealed by extensive research in mice. However, the molecular mechanisms underlying the development of the human NR and RPE, as well as the interactions between these two tissues, have not been well defined. Here, we analyzed 2,421 individual cells from human fetal NR and RPE using single-cell RNA sequencing (RNA-seq) technique and revealed the tightly regulated spatiotemporal gene expression netwo...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Yuqiong HuXiaoye WangBoqiang HuYunuo MaoYidong ChenLiying YanJun YongJi DongYuan WeiWei WangLu WenJie QiaoFuchou Tang
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
64 / 64 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 1610306020248 reported
total reads 5358209416 reported
supplementary file types CSV reported
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently