Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE107654

GEO first seen 2022

Impact of regulatory variation across human iPSCs and differentiated cells [RNA-seq]

Organism
Homo sapiens
Samples
71
Type
Expression profiling by high...
Submitted
2017-12-04

Induced pluripotent stem cells (iPSCs) are an essential tool for studying cellular differentiation and cell types that are otherwise difficult to access. Here we investigate the use of iPSCs and iPSC-derived cells to study the impact of genetic variation across different cell types and as models for the genetics of complex disease. We established a panel of iPSCs from 58 well-studied Yoruba lymphoblastoid cell lines (LCLs); 14 of these lines were further differentiated into cardiomyocytes. We ch...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Nicholas E BanovichYang I LiAnil RajMichelle C WardPo Y TungJonathan E BurnettMarsha MyrthilSamantha M ThomasDiego CalderonPeyton GreensideAnshul KundajeJonathan K PritchardYoav Gilad
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
71 / 71 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 261299161701 reported
total reads 5220629729 reported
supplementary file types TXT reported
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently