Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE107894

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq (human). Grade A: exemplary data across all metrics (Q30=98.1%, base quality=37.7, duplication=28.26%, adapter=0%, N-content=0.006%) with very large scale (3.2B reads, 616B bases). Long reads (98.4 bp) and ultra-low duplication provide excellent sequence diversity. This is a premium-tier dataset suitable for the most stringent analyses including novel isoform discovery and allele-specific expression.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
100 / 100 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 616025003967 reported
total reads 3211367658 reported
n content pct 0.006 measured
pct q20 bases 99.7 measured
pct q30 bases 98.1 measured
gc content pct 47.9 measured
mean read length 98.4 measured
mean base quality 37.7 measured
adapter content pct 0 measured
duplication rate pct 28.26 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.1 measured ×1 100%
mean base quality 37.7 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 28.26 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0