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LKB1, Salt-Inducible Kinases, and MEF2C are linked dependencies in acute myeloid leukemia (RNA-Seq)
Transcriptome analysis by high throughput sequencing
Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Yusuke TarumotoChristopher Vakoc
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct
0.006
measured
pct q20 bases
97.4
measured
pct q30 bases
96.4
measured
gc content pct
50.4
measured
mean read length
76
measured
mean base quality
34.9
measured
adapter content pct
0.14
measured
duplication rate pct
24.15
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
96.4
measured
×1
100%
mean base quality
34.9
measured
×0.6
100%
adapter content pct
0.14
measured
×0.4
100%
duplication rate pct
24.15
measured
×0.4
100%
QC cost
25 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0