GSE109734

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

riboCIRC: a comprehensive database of translatable circRNAs 2021 · 82 cites

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from S. cerevisiae; A-grade (98/100). Duplication at 35.43% is modest and well-controlled; high Q-scores (Q38.4 mean, 97.8% Q30) drive the strong grade and support robust transcriptomic reuse in expression and regulatory studies.

Data type / assay

bulk-RNA-seq

Organism

Saccharomyces cerevisiae

Metrics (value · how obtained)

n content pct 0.006 measured

pct q20 bases 99.3 measured

pct q30 bases 97.8 measured

gc content pct 39.9 measured

mean read length 50 measured

mean base quality 38.4 measured

adapter content pct 0.23 measured

duplication rate pct 35.43 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.8 measured ×1 100%

mean base quality 38.4 measured ×0.6 100%

adapter content pct 0.23 measured ×0.4 100%

duplication rate pct 35.43 measured ×0.4 88%

QC cost 47 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0