Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE110582

GEO first seen 2019

Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq

The identification of DNA G-quadruplexes (G4s) in the genome is important to study different biological processes in which these structures play a role, such as genome rearrangement, transcriptional regulation and DNA replication. G4-seq allowed the high-throughput experimental mapping of G-quadruplexes in the human genome. We developed here an improved version of this method, named G4-seq2, which we applied to generate G-quadruplexes genomic maps for 12 species, selected as important models org...

Provenance — who produced it, who reused it

Linked to 14 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Giovanni MarsicoVicki S ChambersAleksandr SahakyanJonathan M BoutellMarco Di AntonioShanakr Balasubramanian
Reused by

10 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
other
Organism
Escherichia coli; Cereibacter sphaeroides; Arabidopsis thaliana; Caenorhabditis elegans; Drosophila melanogaster; Saccharomyces cerevisiae; Trypanosoma brucei; Danio rerio; Homo sapiens; Leishmania major; Plasmodium falciparum; Mus musculus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
72 / 24 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 2900867036829 reported
total reads 9606015134 reported
supplementary file types BED, BEDGRAPH reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently