Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE110590

GEO first seen 2018

Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer

Organism
Homo sapiens
Samples
83
Type
Expression profiling by high...
Submitted
2018-02-14

Breast cancer metastasis remains a deadly disease with poorly understood clonal evolution and the timing with which drivers are acquired. Here, we present the RNA sequencing data as the RSEM upper quantile normalized data.

Provenance — who produced it, who reused it

Linked to 11 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Marni SiegelCharles Perou
Reused by

7 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
submitted files
N numbers (samples, groups)
232 / 83 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok no reported
supplementary file types TSV reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently