Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE110770

GEO first seen 2018

Profiling of differential RNAs in LY500307-treated 4T1 cells and control cells

Organism
Mus musculus
Samples
2
Type
Expression profiling by high...
Submitted
2018-02-18

In this study, we examined the differential RNA profile of LY500307-treated 4T1 cells compared with control-treated 4T1 cells

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Shengtao Zhou
Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Mus musculus with unavailable instrument details (HTTP error), but exceptional quality metrics (93.9% Q30, 150 bp read length, 0.008% N content). This dataset supports mouse transcriptomics with long-read cDNA libraries enabling isoform resolution. Researchers should contact GEO to obtain the specific sequencing platform used for this library type.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.008 measured
pct q20 bases 97.8 measured
pct q30 bases 93.9 measured
gc content pct 49.3 measured
mean read length 150 measured
mean base quality 38.8 measured
adapter content pct 0 measured
duplication rate pct 21.93 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%
mean base quality 38.8 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 21.93 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0