Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE113143

GEO first seen 2019

LncRNA-directed Antigenicity Loss Suppresses Immunosurveillance

Organism
Mus musculus
Samples
6
Type
Expression profiling by high...
Submitted
2018-04-14

Expression profiles of mouse breast cancer tissues and mammary gland tissues.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Qingsong HuYouqiong Ye
Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Mus musculus with unavailable instrument details (HTTP error), but exceptional quality (95.9% Q30, 75.5 bp read length, 0.003% N content). This dataset supports mouse transcriptomics with intermediate read length enabling balanced isoform resolution and multiplexing efficiency. Researchers should contact GEO to obtain the specific sequencing platform used.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.003 measured
pct q20 bases 97.1 measured
pct q30 bases 95.9 measured
gc content pct 51 measured
mean read length 75.5 measured
mean base quality 34.8 measured
adapter content pct 0 measured
duplication rate pct 25.09 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.9 measured ×1 100%
mean base quality 34.8 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 25.09 measured ×0.4 100%
QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0