Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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GSE113248

GEO first seen 2018

A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription in Trans

Organism
Mus musculus
Samples
26
Type
Genome binding/occupancy pro...
Submitted
2018-04-17

The enhancer regions of the myogenic master regulator MyoD give rise to at least two enhancer RNAs. CEeRNA regulates transcription of the adjacent MyoD gene while DRReRNA affects expression of Myogenin in trans. We found that DRReRNA is recruited at the Myogenin locus where it colocalizes with Myogenin nascent transcripts. DRReRNA associates with the Cohesin complex and such association correlates with its transactivating properties. Despite being expressed in undifferentiated cells, Cohesin is...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Pei-Fang TsaiStefania Dell’OrsoJoseph RodriguezKarinna O VivancoKyung-Dae KoKan JiangAster H JuanAishe A SarshadLaura VianMichelle TranDara WangA H WangJelena PerovanovicDimitros AnastasakisEvelyn RalstonThomas RiedHong-Wei SunMarkus HafnerDaniel R LarsonVittorio Sartorelli
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently