Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE113754

GEO

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk-RNA-seq by high-throughput expression profiling with 98.8 bp reads at 98.2% Q20 and 95.9% Q30 across 1.3 billion bases delivers high-quality transcriptome data. The 49.4% GC and mean quality 36 support comprehensive differential expression and isoform-discovery analysis in mouse developmental or disease models.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Files available
BEDGRAPH, TXT
Metrics (value · how obtained)
n content pct 0.004 measured
pct q20 bases 98.2 measured
pct q30 bases 95.9 measured
gc content pct 49.4 measured
mean read length 98.8 measured
mean base quality 36 measured
adapter content pct 0.01 measured
duplication rate pct 19.33 measured
supplementary file types BEDGRAPH, TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.9 measured ×1 100%
mean base quality 36 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 19.33 measured ×0.4 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 96