Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE114412

GEO first seen 2021

Charting in vitro beta cell differentiation by single cell RNA sequencing

Organism
Homo sapiens
Samples
46
Type
Expression profiling by high...
Submitted
2018-05-14

In vitro differentiation of human stem cells can produce pancreatic beta cells, the insulin-secreting cell type whose loss underlies Type 1 Diabetes. As a step towards mastery of this process, we report on transcriptional profiling of >100,000 individual cells sampled during in vitro beta cell differentiation and describe the cells that emerge. We resolve populations corresponding to beta cells, alpha-like poly-hormonal cells, non-endocrine cells that resemble pancreatic exocrine cells and a pre...

Provenance — who produced it, who reused it

Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Adrian VeresAubrey L FaustHenry L BushnellElise N EngquistJennifer Hyoje-Ryu KentyGeorge HarbYeh-Chuin PohElad SintovMads GürtlerFelicia W PagliucaQuinn P PetersonDouglas A Melton
Reused by

6 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
84 / 46 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 755861200119 reported
total reads 9054683092 reported
supplementary file types TSV reported
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently