Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE115181

GEO first seen 2019

Gene expression analysis of wild type and Lats1/2-mutated uveal melanoma

Organism
Mus musculus
Samples
5
Type
Expression profiling by high...
Submitted
2018-05-31

Lats1/2 kinases are the core Hippo pathway kinases. In this study, we use RNAseq to analyze the gene expression profiles of adult mouse uveal tract cells and mouse uveal melanoma generated by Lats1/2 deletion induced by AAV-based Cre injection into mouse uveal tract.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Huapeng LiJunhao Mao
Reused by

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Mus musculus with unavailable platform information (HTTP fetch error), but good base quality (92.2% Q30, 75 bp read length, 0.01% N content). This dataset enables mouse gene expression studies, though the unknown sequencing platform limits optimization of quality control approaches. GEO contact recommended for obtaining complete experimental specifications.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.01 measured
pct q20 bases 95.3 measured
pct q30 bases 92.2 measured
gc content pct 52.6 measured
mean read length 75 measured
mean base quality 37.1 measured
adapter content pct 19.11 measured
duplication rate pct 11.18 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.2 measured ×1 100%
mean base quality 37.1 measured ×0.6 100%
adapter content pct 19.11 measured ×0.4 5%
duplication rate pct 11.18 measured ×0.4 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0