Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE115295

GEO first seen 2018

miR-100 maintains phenotype of tumor associated macrophages by targeting mTOR to promote tumor metastasis via Stat5a/IL-1ra pathway in mouse breast cancer

Organism
Mus musculus
Samples
2
Type
Non-coding RNA profiling by...
Submitted
2018-06-04

Tumor-associated macrophages (TAMs),the main part of immune cells in tumor microenvironment (TME),play a potent role in promoting tumorigenesis through mechanisms such as stimulating angiogenesis, enhancing tumor migration and suppressing antitumor immunity. MicroRNAs (miRNAs) are considered as crucial regulators in multiple biological processes. The relationship between miRNAs and macrophages function has been extensively reported, but the roles that miRNAs play in regulating TAMs phenotype r...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Wei WangYan Liu
Reused by

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Mus musculus with unavailable platform details (HTTP error), but exceptional quality (95.3% Q30, 50 bp read length, 0.007% N content). This dataset supports mouse transcriptomics with short-read chemistry for high-throughput sample multiplexing. Researchers should contact GEO to verify sequencing platform and library preparation methods.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.007 measured
pct q20 bases 98.5 measured
pct q30 bases 95.3 measured
gc content pct 51.3 measured
mean read length 50 measured
mean base quality 37.3 measured
adapter content pct 0 measured
duplication rate pct 88.7 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.3 measured ×1 100%
mean base quality 37.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 88.7 measured ×0.4 0%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0