GSE115437

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

HDAC1 modulates OGG1-initiated oxidative DNA damage repair in th... 2020 · 209 cites

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.037 measured

pct q20 bases 86.9 measured

pct q30 bases 83.2 measured

gc content pct 43.2 measured

mean read length 40 measured

mean base quality 32 measured

adapter content pct 0.88 measured

duplication rate pct 43.51 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.2 measured ×1 66%

mean base quality 32 measured ×0.6 67%

adapter content pct 0.88 measured ×0.4 100%

duplication rate pct 43.51 measured ×0.4 70%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0