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Chromatin and tissue plasticity precede commitment to intestinal differentiation during endoderm development
Intestinal differentiation during endoderm development We used RNA-sequencing to profile gene expression changes during the embryonic development of the gastrointestinal tract.
Provenance — who produced it, who reused it
Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Kushal K BanerjeeMadhurima SaxenaNamit KumarLei ChenAlessia CavazzaNatalie TokeNicholas K O'NeillShariq MadhaUnmesh JadhavMichael P VerziRamesh A Shivdasani
Reused by
- Extensive Recovery of Embryonic Enhancer and Gene Memory Stored... 2019 · 87 cites
- The lineage-specific transcription factor CDX2 navigates dynamic... 2019 · 82 cites
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ATAC-seq
Organism
Mus musculus
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
74 / 74 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
181176183901
reported
total reads
2455526668
reported
supplementary file types
TXT
reported
QC cost
6 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently