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Histone deacetylase inhibitors in alveolar rhabdomyosarcoma
Organism
Homo sapiens; Mus musculus
Samples
30
Type
Expression profiling by high...
Submitted
2018-06-12
Multiple histone deacetylase inhibitors were tested on multiple alveolar rhabdomyosarcoma cell lines and multiple patient-derived xenograft models of alveolar rhabdomyosarcoma
Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Noah E BerlowCharles KellerNarendra Bharathy
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Mus musculus; Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
30 / 30 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
289516666666
reported
total reads
1351355986
reported
supplementary file types
TXT
reported
QC cost
14 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently