Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE115814

GEO first seen 2018

Bacterial RNA-Seq

Organism
mouse gut metagenome
Samples
45
Type
Expression profiling by high...
Submitted
2018-06-14

The gut microbiota is essential for several aspects of host physiology such as metabolism, epithelial barrier function and immunity. Previous studies have revealed that host immune system as well as diet and other environmental factors have a strong impact on the composition and activity of gut microbiota, but the molecular requirements for such functional regulation remain unknown. We show that the bacteria belonging to phylum Bacteroidetes acquire their symbiotic activity in the colonic mucus,...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Akira NakajimaAlexis VogelzangMikako MaruyaMichio MiyajimaMegumi MurataAoi SonTomomi KuwaharaTatsuaki TsuruyamaSatoshi YamadaMinoru MatsuuraHiroshi NakaseDaniel A PetersonSidonia FagarasanKeiichiro Suzuki

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently