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Decoding the 5’ nucleotide bias of PIWI-interacting RNAs (piRNAs)
Analysis of Piwi-piRNAs that assocaite with wild type Piwi and specificity loop (SL) mutants in ovarian somatic sheath cells (OSC) and Droosphila ovaries.
Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Chad B SteinPavol GenzorSanga MitraAlexandra R ElchertLeif BennerSushil SobtiJonathan J IpsaroMolly HammellLeemor Joshua-TorAstrid D Haase
Reused by
- Decoding the 5′ nucleotide bias of PIWI-interacting RNAs 2019 · 82 cites
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Drosophila melanogaster
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
39 / 39 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
40708755662
reported
total reads
900598925
reported
supplementary file types
XLSX
reported
QC cost
4 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently