Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE116329

GEO first seen 2018

Methylation of structured RNA by the m6A writer METTL16 is essential for mouse embryonic development

Organism
Mus musculus; synthetic RNA
Samples
74
Type
Expression profiling by high...
Submitted
2018-06-27

Internal modification of RNAs with N6-methyladenosine (m6A) is a highly conserved and widely used means of gene expression control. METTL16 is an m6A writer but how it recognizes its RNA targets and its physiological roles remain unknown. Here we describe the crystal structure of human METTL16 to reveal a classical methyltransferase domain but with an extra N-terminal module that is essential for catalysis. Together, they form a deep-cut groove lined by highly conserved positively charged residu...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Mateusz MendelKuan-Ming ChenDavid HomolkaPascal GosRadha R PandeyAndrew A McCarthyRamesh S Pillai

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
other
Organism
synthetic RNA; Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
74 / 74 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 410876093200 reported
total reads 2678041126 reported
supplementary file types CSV reported
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently