Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE116555

GEO first seen 2018

Human iPSC-EC differentiation

Organism
Homo sapiens
Samples
2
Type
Expression profiling by high...
Submitted
2018-07-02

We performed large-scale single-cell RNA-seq on human iPSCs subjected to endothelial cell differentiation.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
David T PaikLei TianJoseph C Wu
Reused by

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Homo sapiens with unavailable instrument details (HTTP error), but moderate quality metrics (86.6% Q30, 98 bp read length, 0.002% N content). This dataset enables human gene expression studies with long reads for isoform identification, though missing platform specifications require GEO contact. The moderate Q30 rate suggests careful quality filtering before analysis.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.002 measured
pct q20 bases 91 measured
pct q30 bases 86.6 measured
gc content pct 46.9 measured
mean read length 98 measured
mean base quality 33 measured
adapter content pct 0 measured
duplication rate pct 81.92 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.6 measured ×1 83%
mean base quality 33 measured ×0.6 83%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 81.92 measured ×0.4 0%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0