Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE11657

GEO first seen 2014

The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation: ChIP-seq data

Organism
Arabidopsis thaliana
Samples
6
Type
Genome binding/occupancy pro...
Submitted
2008-06-03

These ChIP-seq data files are part of a study where a comparison was made between the change in transcription and H3K4 mono-, di-, and tri-methylation levels in the Arabidopsis thaliana genome when plants are subjected to water deficit stress.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Karin van DijkJean-Jack M RiethovenJingyi YangPeter LaczkoHan ChenYuannan XiaIstvan LadungaMichael E Fromm
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently