GSE116942

A systematic reassessment of N6-methyladenine in metazoan genomes

Organism

Escherichia coli

Samples

2

Type

Methylation profiling by hig...

Submitted

2018-07-11

We report the application of SMRT seqeuncing from Pacific Biosciences to study the DNA base modifications in dam-/dcm- and wild type E.coli.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by

Simon Y WangEric L Greer

Sources of artifact in measurements of 6mA and 4mC abundance in... 2019

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

other

Organism

Escherichia coli

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 / 2 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 2225106581 reported

total reads 316918 reported

supplementary file types GFF reported

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently