Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE117193

GEO first seen 2019

The induction of core pluripotency master regulators in cancers defines poor clinical outcomes and treatment resistance

Organism
Homo sapiens
Samples
24
Type
Expression profiling by high...
Submitted
2018-07-16

Clinical expression of core pluripotent stem cell master regulators OCT4, SOX2 and NANOG is associated with treatment resistance and lethal cancers. We have described a novel model to induce the expression of these factors in vitro. We term this culture environment ‘Acquired Pluripotent Stem Cell Environment (APSCE)’ and RNA-seq comparisons were made to culture in conventional serum supplemented ‘Full Media’ (FM) in human prostate (LNCaP, CWR22Rv1) and bladder (RT112) cancer cell lines. Depletio...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Anastasia HepburnRebecca E SteeleRajan VeeratterapillayLaura WilsonAmy BarnardPhilip BerryJames CassidyMohammad MoadAmira El-SherifLuke GaughanIan G MillsCraig RobsonRakesh Heer
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
23 / 24 runs
Completeness
95.8%
Metrics (value · how obtained)
checksum ok yes reported
total bases 90771368268 reported
total reads 401735549 reported
supplementary file types TXT reported
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently