Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE117632

GEO first seen 2018

N6-methyladenine DNA Modification in Glioblastoma [RNA-seq]

Organism
Homo sapiens
Samples
11
Type
Expression profiling by high...
Submitted
2018-07-25

Genetic drivers of cancer can be dysregulated through epigenetic modifications of DNA. While the critical role of DNA 5-methylcytosine (5mC) in the regulation of transcription is recognized, the functions of other non-canonical DNA modifications remain obsure. Here, we report the identification of novel N(6)-methyladenine (N6-mA) DNA modifications in human tissues and implicate this epigenetic regulation in human disease, the highly malignant brain cancer, glioblastoma. Glioblastoma upregulates...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Qi XieTao P WuRyan C GimpleZheng LiBriana C PragerQiulian WuYang YuPengcheng WangYinsheng WangDavid U GorkinCheng ZhangAlexis V DowiakKaixuan LinChun ZengYinghui SuiLeo J KimTyler E MillerLi JiangChristine HLeeZhi HuangXiaoguang FangKui ZhaiStephen C MackMaike SanderShideng BaoAndrew E SloanAndrew Z XiaoJeremy N Rich

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
11 / 11 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 28883827425 reported
total reads 306968363 reported
supplementary file types XLSX reported
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently